rs46233074 SNP Detail

Summary

• ID
  rs46233074
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143912234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTAGCTC ACGACCCTGA
  AAAAAGACTA GTCGTTTCTT GTACAAACCA AGATTTGAGG AATGCTAGCT AGCTTCAGAG
  CCTCTTTCCA GGGCCAGAGC TCAGCCTGGA TCCTTGAACA TCAAGTTATT CAACTTTACT
  CTGCCAAATA GGTTTAATAA ATCTCCGATC TGAGGTTAAT ACTAGGGTTG ATTATTAATA
  R
  TAAGTTCCAG AGAGATTTTT CTGTTGGAAA TTATCATGGA AGTGCAAAGC TGTACTGCTA
  AGTATCATTA ACTAAAACCA GTCTTGTGGG AGAAGCTTGG AAGAAAGGAA GTTGAAGAAA
  AATCAGGCAA AAAATCTACA GTCCTAGCAG CTGTGTGCAG AATTTTGGTT CTTTAAACTG
  CCAAAATTAG GGCAAAGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136029271	ENSMUSSNP455636	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46233074					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143912234 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13895	CpG island 13895	513 bp distal
Lmo4	LIM domain only 4	1253 bp upstream
Rr398096	regulatory region 398096	693 bp downstream
Rr406521	regulatory region 406521	1931 bp distal
Rr586601	regulatory region 586601	1264 bp distal
Rr586602	regulatory region 586602	763 bp distal
Rr586603	regulatory region 586603	991 bp proximal
Tssr35968	transcription start site region 35968	1595 bp upstream
Tssr35969	transcription start site region 35969	1544 bp upstream
Tssr35970	transcription start site region 35970	1492 bp upstream
Tssr35971	transcription start site region 35971	1265 bp upstream
Tssr35972	transcription start site region 35972	943 bp upstream
Tssr35973	transcription start site region 35973	488 bp upstream