rs46231798 SNP Detail

Summary

• ID
  rs46231798
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141980435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCGACAA CTACTGGAGT
  TATTTTAAAA TACTTAGATC AAGTCTGTTT TTCTTTCCGT TGTGGAGAGC AGAGCAAATA
  TATGAACTAA CTAGGAAATC AAGCTCTTAG TGGGGCAGCA GCCATGTCCC TGGCTTTTTT
  CCATGTGAGT CATCATGGCC CAGTGACTTG TGCTGTCAGG TTCTGCTGCC CTTTGACCTG
  M
  ACCGCTGCTT TCACAGGTGA ACTATGAAAC TATCAAGAAC CACCAACCAT GCCCTAGTTC
  CAAAGGACTT TCACATCTTC ATCAGGAATC TCTTAGAAAT GTCAAATACT AATACTATGT
  TCTAAAGGAG TGTCATTTTG CTCTTTTAAA TGACATACTT CTAGGTACTG TATGATAGAA
  ACATGAGAGC CTGGAAATTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61087916	NES16611963	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C	C	C	C	C	C	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46231798					SNP	C	C	A	C	C	C	C	C	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61087916	NES16611963	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141980435 () rs orientation: forward

Symbol	Name	Function Class
Pdlim5	PDZ and LIM domain 5	Intron
Rr398078	regulatory region 398078	427 bp upstream
Rr586404	regulatory region 586404	within coordinates
Rr586405	regulatory region 586405	430 bp proximal
Rr586406	regulatory region 586406	558 bp proximal