rs46231063 SNP Detail

Summary

• ID
  rs46231063
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:69764761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATGAAAT GCCATTTTTT
  TTCAGTAAAT GTGCATTGGT TTCTAAAATG TGGAAGGCAA TACTAGGTGC AGGCAGCTTA
  CATTAAGACC AGCTGAGTAT CAGGCTGAGG CAAGTGAGCA TACAGCAGCC AGAGTGTGTA
  CACTCTGACA CTTGAATGAG GTGGCTTAAT GAACACTTTG CACTTTTCAT GGGAGGAATC
  K
  TTCTATCGCC CGTTTAGTCC CGCTTTGGGC TCTTTCTGAA TTGTAGTGCA CCACCTGTTT
  GTTGACTATA CAGTTCCCAG GAAAAACCCA GGCTGGATCC TGCCCTGCCT TTCACTCTTC
  TTAAAGATAC TTCAGAAGTG ACGTGGTGCT TCCTCCGTCC CTTATTACGA ACCCTCTAGA
  AATAGAAATA AATTACCATC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325671476	CHEV_18_69791344	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs46231063					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:69764761 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr540232	regulatory region 540232			950 bp distal
Rr540233	regulatory region 540233			within coordinates
Rr540234	regulatory region 540234			363 bp proximal
Tcf4	transcription factor 4			Intron
				Noncoding-Transcript-Variant