rs46226842 SNP Detail

Summary

• ID
  rs46226842
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:149392626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGAG TGTGGAGTCA TTGTCCGTTT
  R
  GAAAAACAGC TCAAACGGTG AAGCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148031052	ENSMUSSNP696225	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs46226842					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149392626 () rs orientation: forward

Symbol	Name	Function Class
Kif1b	kinesin family member 1B	mRNA-UTR
Rr398866	regulatory region 398866	193 bp downstream
Rr604876	regulatory region 604876	674 bp distal
Rr604877	regulatory region 604877	839 bp distal
Rr604878	regulatory region 604878	within coordinates
Rr604879	regulatory region 604879	240 bp distal
Rr604880	regulatory region 604880	1425 bp proximal
Tssr44642	transcription start site region 44642	466 bp upstream
Tssr44643	transcription start site region 44643	431 bp upstream