rs46225823 SNP Detail

Summary

• ID
  rs46225823
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95290375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGAAAACG TTTTTGGACG
  TTGAAAGTTA CTTTTTAGTT TGGTCTGCGT TGGTTTGTAT ACTTTTCTTT CGCTGATGAG
  GGAATAAACT TCCATTGTAA AATGGGACAG CTACAGGATG GGTGGAGGTT AGAGGGCACA
  TAGGAAAGAT TGTACTCCAG TTTCCACCTA GAAGGGCAGA AAGATGAGTC ATTGCGGTCC
  K
  GAGGTGAACT ACTGATCACT GGGAGACTGA TTGCCCCCCG TCTCTCAGAA GCTTTTACAA
  GTAAAACATA ATTACTGCAA AATTATCATA GTCTACCTGG AGCAGCCCAC CTCGGCTGAT
  GACCCTCCTA AATTTAAAGC GTTGCCATTG ACGACTTTTT TTTTTTTCAG GGTATTGTAC
  AGAATCTTCT GGGTACAGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	MSM/Ms	SM/J
ss136828253	ENSMUSSNP3520755	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		T
ss323100051	CHEV_9_95308741	CHEVERUD	SCREENING_POP	f	SNP		T		G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	MSM/Ms	SM/J
rs46225823					SNP	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95290375 () rs orientation: forward

Symbol	Name	Function Class
Chst2	carbohydrate sulfotransferase 2	1052 bp upstream
Gm35915	predicted gene, 35915	within coordinates
Gm37805	predicted gene, 37805	within coordinates
Rr684790	regulatory region 684790	957 bp distal
Rr684791	regulatory region 684791	38 bp distal
Tssr86547	transcription start site region 86547	883 bp downstream
Tssr90904	transcription start site region 90904	1203 bp upstream
Tssr90905	transcription start site region 90905	1131 bp upstream
Tssr90906	transcription start site region 90906	1110 bp upstream
Tssr90907	transcription start site region 90907	1083 bp upstream
Tssr90908	transcription start site region 90908	1046 bp upstream
Tssr90909	transcription start site region 90909	1023 bp upstream
Tssr90910	transcription start site region 90910	989 bp upstream
Tssr90911	transcription start site region 90911	961 bp upstream
Tssr90912	transcription start site region 90912	543 bp upstream