rs46224718 SNP Detail

Summary

• ID
  rs46224718
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90616325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAG GTTGGGGGTG GGGGTAGGGT
  Y
  AAGTTGCTGT AGGTCTTGGA AGATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss135478740	ENSMUSSNP1272109	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320838622	CHEV_3_90512940	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs46224718					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90616325 () rs orientation: forward

Symbol	Name	Function Class
Gm42579	predicted gene 42579	within coordinates
Rr580435	regulatory region 580435	177 bp distal
Rr580436	regulatory region 580436	248 bp distal
Rr580437	regulatory region 580437	691 bp proximal
Rr580438	regulatory region 580438	950 bp proximal
Rr580439	regulatory region 580439	1211 bp proximal