rs46213464 SNP Detail

Summary

• ID
  rs46213464
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66444054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATATTCT ACATTGATTG
  ATTCGTGTCT TCATATTTGT GCAAAAAAAT ATTACACTGT CTTTTATGGA TCAATTAAAA
  ATATAAAGAA ATGGGTAAGC TAGGCCAAGG ACTGACCACA ACTGGAGCAG AAGCTGGGAA
  AGACAATTCA CTGGAGAGGC AAAGAGCTGA GCATAGACAC AGAGATAAGG GGCCATAGCA
  Y
  ACTGTATGAC CACAGCCGAG GATTACACAA AGTAGGGACT GAACCCTGTC TCTGATTCTG
  GATCAGTTGT CATGGCCCAG CCAGCACTGG TTCTGCCGAG AGCTTGTGGG TTTCTAGACC
  CTTCTGGAAG CTCTCCTTGA AGCTGTTTGC TGTTCAGCTG CCTCACCAGA TATTCTGAGT
  CTAGGGGCGG GAAAGGAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss63152031	NES17452113	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs46213464					SNP	C	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63152031	NES17452113	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66444054 () rs orientation: forward

Symbol	Name	Function Class
Gm15958	predicted gene 15958	within coordinates
Rr539711	regulatory region 539711	132 bp proximal
Rr539712	regulatory region 539712	1865 bp proximal
Rr539713	regulatory region 539713	1907 bp proximal