rs46211821 SNP Detail

Summary

• ID
  rs46211821
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:66988039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGAGAGC TGGAGTAAAT
  GGAGGCTTGC TCTTTTGTTA CAGCCACAGA GGGATGTTTG TTCTTGGAAG TTGCTTCGCC
  CCAGTGATTA GCTCTGGGCC AGGCCACTGT GACTTGTCAT TCAGACTCTA GGCTCCTCTG
  TTCCTTCCAC TGAAGAGTAT GCTCTGTGAC ACATTTTATG CTCACTCTCC TCTCTGGCTC
  R
  GGTCCTCTTG ACACAGATTT AAGTGCCTGT ATTCCCTTAA TGGAACACCC TTTTCCTAGG
  AATTTCTAAG AATCTCAGAA TTTAGGCAAG CCATAGTGTC AAAACCAGTG CAAACCATTT
  GATTACCTAA ATACCTCATG TCTGTTCCAT TATTTTGCCC ATGTATGAAG CTGAAAAGAA
  ACAACAGCTG GTTTTCATCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60892261	NES15964106	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46211821					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60892261	NES15964106	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:66988039 () rs orientation: forward

Symbol	Name	Function Class
Gm15644	predicted gene 15644	1430 bp upstream
Gng12	guanine nucleotide binding protein (G protein), gamma 12	Intron
Rr379521	regulatory region 379521	1100 bp downstream
Rr631572	regulatory region 631572	1909 bp distal
Rr631573	regulatory region 631573	1416 bp distal
Rr631574	regulatory region 631574	1984 bp proximal