rs46201622 SNP Detail

Summary

• ID
  rs46201622
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146051101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTACCATAG CAACGCCAGT
  CTGAGCCACA GCATGTTTCC AAATGTCTTT CTCTGTGGGG AGATGTTCGA GGGCAGATTT
  CAAATTTTTT AATTAAGGAA AAGAATAAAG AATCAAGTTT AATGGGTTAA GAGCCATGCT
  AGAATGCCAA TAACCCTCCC TCCAAGGCCT GAGAAGTCTG GTGAGGAGCG CTTTCTGGGA
  M
  ATGACAATTT CCCAGAACCG CAGCGTGGGG TCGCTGTGGT TCCACCGCTG CCTACGCCTC
  CGTCTGGCGC CTCAGAGAAA GGGCTTCCCT GCTCCTCCTT TGAGCCGCCC TAACAGTCCT
  GTCTTTAAAC CGCATTTATG ACTATTCTGT GCCGAGACTG TGAAAACCTC TTGGGACAGA
  GTCACAGTGA ACAGCAGCCG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136043412	ENSMUSSNP1284881	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
ss321010019	CHEV_3_146008310	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46201622					SNP	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146051101 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13916	CpG island 13916	within coordinates
Gm40167	predicted gene, 40167	1088 bp upstream
Rr587008	regulatory region 587008	1307 bp distal
Rr587009	regulatory region 587009	1512 bp distal
Rr587010	regulatory region 587010	within coordinates
Rr587011	regulatory region 587011	51 bp proximal