rs46200523 SNP Detail

Summary

• ID
  rs46200523
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130910556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAA TGGCCCCCAT AAGCCCATAT
  K
  TTTGAATGTT TTGTCCCCAG TTACT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147598357	ENSMUSSNP4653228	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46200523					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130910556 () rs orientation: forward

Symbol	Name	Function Class
Rr565176	regulatory region 565176	752 bp distal
Siglec1	sialic acid binding Ig-like lectin 1, sialoadhesin	584 bp downstream
Tssr20240	transcription start site region 20240	76 bp upstream
Tssr26336	transcription start site region 26336	1305 bp upstream
Tssr26337	transcription start site region 26337	472 bp upstream
Tssr26338	transcription start site region 26338	158 bp upstream
Tssr26339	transcription start site region 26339	93 bp upstream
Tssr26340	transcription start site region 26340	12 bp upstream
Tssr26341	transcription start site region 26341	240 bp downstream
Tssr26342	transcription start site region 26342	261 bp downstream
Tssr26343	transcription start site region 26343	315 bp downstream
Tssr26344	transcription start site region 26344	370 bp downstream