rs46200080 SNP Detail

Summary

• ID
  rs46200080
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152723092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGATAGCTT CAAGATGGGT
  TTTCTGTGAA AATGTCCTCA TTCTGAAAAT GATAGCACCA GCATTATTTT TAACCACATG
  GTATAAGAGT ATTTCAATGG ATTGAAAAAT CCATTCCCAT GATCACAAGG AATTCTAGTA
  TTATAGTAAT AAGGAAGATC TGTTAGTTTC TTACACATCT GTTAGTTTCT TCTACATTTT
  W
  AAAAATTATT TCACGCATTT TATCCTCTAC CTGAGAAAAC AAAATCTCTC ATGGTGATAC
  CTATAAAGAC TCTGAAAAGA TCACTATGAA AAGATCCTTC ATCAGTAATT TTGTAGAGTT
  ATTTCAAACA CAAAACTTAA TATAAATAAA AGTTAGGGCT TTGGAAGCAA GCTCAAGATT
  TCCATTCAAC AGCTGGAGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss136105650	ENSMUSSNP4838936	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss321029588	CHEV_3_152680419	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs46200080					SNP	T	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152723092 () rs orientation: forward

Symbol	Name	Function Class
Gm16213	predicted gene 16213	within coordinates
Rr587644	regulatory region 587644	604 bp proximal