rs46199977 SNP Detail

Summary

• ID
  rs46199977
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95904259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAC AGCACACTTT ACAGACTATC
  Y
  CCTCCTCATC TCTGTTTGGT ACTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135513458	ENSMUSSNP2716526	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320841343	CHEV_3_95800870	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46199977					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95904259 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13533	CpG island 13533	438 bp distal
Gm9052	predicted gene 9052	463 bp downstream
Gm65578	predicted gene, 65578	156 bp downstream
Plekho1	pleckstrin homology domain containing, family O member 1	1001 bp upstream
Rr581116	regulatory region 581116	456 bp distal
Rr581117	regulatory region 581117	373 bp proximal
Tssr30674	transcription start site region 30674	943 bp downstream
Tssr30675	transcription start site region 30675	821 bp downstream
Tssr30676	transcription start site region 30676	787 bp downstream
Tssr34578	transcription start site region 34578	1288 bp upstream
Tssr34579	transcription start site region 34579	1255 bp upstream
Tssr34580	transcription start site region 34580	1225 bp upstream
Tssr34581	transcription start site region 34581	1145 bp upstream
Tssr34582	transcription start site region 34582	1126 bp upstream
Tssr34583	transcription start site region 34583	1090 bp upstream
Tssr34584	transcription start site region 34584	992 bp upstream
Tssr34585	transcription start site region 34585	937 bp upstream
Tssr34586	transcription start site region 34586	365 bp downstream