rs46198104 SNP Detail

Summary

• ID
  rs46198104
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27165408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAGGTAAA TGTTTGCTGC
  CATCTTGTGG ATAATTATAT TATCTGAAAT TTTCTGCATT TGTTGCTTAT AGTTCAGTTC
  TAATATGATT ATTCATCTTA TAGCCAATAA TTACACTTTA AGCAAAACTT TTCATTAGCT
  TTGCATTTCA ATGTTACAAA GTTATCCACC TAGAAAAGAC TGCATAAGCC ATTCTGTTAC
  Y
  TACCCTGATA TATGTAATAT CATTATAAGG CAAGTGTAAA TTTGGTAAAA TGTTATTCCC
  CTGGGAAGGC CCAAGAAACT CTTAATACTA TTACTACACA GTGTCAATTT CTTTCAGCAA
  CAGATCTATT CGCTGTATCA TTTCTGCAGA GTAAGGGCTC TCTATCTAAC AACCTGACAA
  GATCACGTTA TCTTCCAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss134702116	ENSMUSSNP976401	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs46198104					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27165408 () rs orientation: forward

Symbol	Name	Function Class
Ect2	epithelial cell transforming 2	Intron
Rr574346	regulatory region 574346	76 bp distal
Rr574347	regulatory region 574347	166 bp distal