rs46192927 SNP Detail

Summary

• ID
  rs46192927
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152497340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTAT GAGGTTCTGT GCCTAGTCTT
  A
  TTGTAACGCA TGTTCAGTTG ATATC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147970960	ENSMUSSNP6329540	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320562933	CHEV_2_152481156	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs46192927					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152497340 () rs orientation: forward

Symbol	Name	Function Class
1700030C14Rik	RIKEN cDNA 1700030C14 gene	1090 bp upstream
Rr374088	regulatory region 374088	1445 bp downstream
Rr567410	regulatory region 567410	1849 bp distal
Rr567411	regulatory region 567411	1079 bp distal
Rr567412	regulatory region 567412	578 bp distal
Rr567413	regulatory region 567413	434 bp proximal
Tssr26849	transcription start site region 26849	1161 bp upstream
Tssr26850	transcription start site region 26850	1154 bp upstream
Tssr26851	transcription start site region 26851	1116 bp upstream
Tssr26852	transcription start site region 26852	1087 bp upstream