rs46190072 SNP Detail

Summary

• ID
  rs46190072
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:15639485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCTTTCT CTCTCTCTCT
  CTCTCTCTCT CTCTCTCTCT CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT TTCTTAAAGA
  AAGCAAGTTA GAAAGACTCA GCTCAGTAGT CAAAAGTGCA ATTTGGGTTT TATTGTGCAA
  AAACCTAAAG TGGAAACAGC CCTTCAGAAA CTGCTTAACA TACATGGAAT TCAAAAAGCC
  Y
  TCTTTACAAG GCCTTCGGTG CACTCATGCT AGCACAACCA AGTTCTCTGC CCAAGTTATT
  CCTTTCAAGC TTCATAGTTT AAGCACAACA TGAATACCTC GGCCACAGGA ACTCAGTGAA
  GCAGCAAACA CGGGCTCAGT GTCCCTCCTT CACTTGACAG GATTCTGGGG AAACCTCCTG
  TTGCTCCTTT CAGAGGCAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60865399	NES15989600	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs46190072					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60865399	NES15989600	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15639485 () rs orientation: forward

Symbol	Name	Function Class
Gm36352	predicted gene, 36352	within coordinates
Gm44039	predicted gene, 44039	1117 bp downstream
Rr626670	regulatory region 626670	265 bp distal
Rr626671	regulatory region 626671	within coordinates