rs46181507 SNP Detail

Summary

• ID
  rs46181507
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117117078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTATTGGCT TATTCAAACA TCAGCAGAAA AATTACATGT
  ACGTGCAGGG TGTCAGAGTT CTGTGAGTTG TTGACTCAGT TCAGATAGCC CTGTTATGTC
  Y
  TCACATCCCC TTTATCTTAT GTTCAAGCTG TTACCAGGAA TGTTTTAACT ATGGGGCATA
  CCCGGGTTTG TTTTTCTTTT TTCTCAGCCC CAGGCAGCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss147286824	ENSMUSSNP5481453	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs46181507					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117117078 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr598098	regulatory region 598098			207 bp proximal
Rr598099	regulatory region 598099			1540 bp proximal
Tmem53	transmembrane protein 53			Intron
				Noncoding-Transcript-Variant