rs46178052 SNP Detail

Summary

• ID
  rs46178052
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:57376686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGTGTCT TTTACACAGA
  CTAGCTAGAA TAGAAAAACA CCAATTACAA GATTCTAGAC AGACAATCAC AAAGAATAGA
  CAATGGACAG GCATTAGGAT GTTCATCTAA CCCCTATATT GCTGTTCTCT GGTCTTACAT
  CCATCTCCAG GAACATCATT ACTTCTGCAA TTACTCCAGC TGACTTCCCT GCCATGCCAT
  S
  AAGCCGTGTG TCAGGCGTTG GGCAGGTCTA TCAGTGCTTT CACCAAGCCA CACAATGCAT
  GAGCATGACC ACTGGAGAAT ATCGGGTCTT CGAGGAGTCA GGATATCACA AAACTCAAAG
  GCCTCGCAAT GGCTCTTAAG CTACTAGTGA ACTACAAGAT CCCTCCAGTC ACAGATTTGT
  GGCAGACAGA ATGAAGAAAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss135201504	ENSMUSSNP7101826	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs46178052					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57376686 () rs orientation: forward

Symbol	Name	Function Class
Rr1931	regulatory region 1931	856 bp proximal
Rr375020	regulatory region 375020	813 bp upstream
Rr577104	regulatory region 577104	864 bp proximal
Rr577105	regulatory region 577105	944 bp proximal
Rr577106	regulatory region 577106	1115 bp proximal
Wwtr1	WW domain containing transcription regulator 1	Intron