rs46176116 SNP Detail

Summary

• ID
  rs46176116
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:118405872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGGCTCCAGC AACTTTTTTG TGGTGTGGCA ACTTGGGTGA
  GGGAGAGATG CCCTCCTCCC TCACCTACCC TCACCCCTTG CCACCTATGG CCCCAGGGTC
  R
  TGAAAGTGGG AGAACTGGTC CTGTCCCTCA CCAGCTGCAA TGCTCAGGAA ATTGGGCCCT
  GCATCTCCCC TGGGTAGCAA GGTAGAGCTG GCCAGGATT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss149162347	ENSMUSSNP2856001	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321662379	CHEV_5_118717816	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46176116					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:118405872 () rs orientation: forward

Symbol	Name	Function Class
Gm25076	predicted gene, 25076	1227 bp downstream
Gm73266	predicted gene, 73266	1436 bp upstream
Rr618847	regulatory region 618847	1294 bp distal
Rr618848	regulatory region 618848	1018 bp proximal
Rr618849	regulatory region 618849	1387 bp proximal
Rr618850	regulatory region 618850	1458 bp proximal