rs46175173 SNP Detail

Summary

• ID
  rs46175173
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:3966513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTGGGTT CTATGAGTCT
  TCAGTTTTGT CTCATCTAGG TGAGTCTCGA GTTTTTCGCC TTTCATGCCT GATGATTTTA
  AGAGTATAGA CTACTTATTT GTAGAAGTTC TCCCTAATTT GGCCATCCCA TTACTGCCTC
  ATTACTGTAA GGCTTATGTT GTGTTGAGAG GAGCGCTGAT AAGGCTGCCA TGTCCTCTGA
  R
  TGTTGTATCT GGAGATGTGT GATGTTGCAG ATAAATGTAC TTGTCAGTGC TATTCACCTA
  AGTAAGACTA TGCATCTTAG ATGATGGGGA CTTTGGTTTC CTTCTGCTCA AAGTTGAATC
  ACCTTTTAAA AATTCCATAG GATCATGTTC AGTCCACATT AAAATCTAGG GTAACTCTAG
  AGGAGAGGGT TGTGTGCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss145944920	ENSMUSSNP416412	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs46175173					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:3966513 () rs orientation: forward

Symbol	Name	Function Class
Rr588254	regulatory region 588254	848 bp proximal
Rr588255	regulatory region 588255	1201 bp proximal