rs46171878 SNP Detail

Summary

• ID
  rs46171878
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:119541400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAATGGTGGG TACAGTGCTT AGTGCACAAG CACGAGGACT
  CTAGTTCCAT CCCCAGCACC CACAGAAAAG ACTGGGTGTT GTATGCACGG GAAATCCCAA
  Y
  GCTGGAAAGG CTGAGGCAAC TTAACCAACA AGTCTGCAGC AACAAGGGAC CCTGTCTCAA
  AAGGGATATG AGCATGGCAG ACATAGTATA TTTTGTTTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss133591001	ENSMUSSNP2623203	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321928717	CHEV_6_119514457	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46171878					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119541400 () rs orientation: forward

Symbol	Name	Function Class
Gm44317	predicted gene, 44317	1785 bp upstream
Rr637713	regulatory region 637713	1580 bp distal
Rr637714	regulatory region 637714	761 bp distal
Rr637715	regulatory region 637715	1081 bp proximal