rs46171423 SNP Detail

Summary

• ID
  rs46171423
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151477849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACAATGAGG TACCACTACA CAATACAAGT GACTCAAATG
  GCAAGGGCCT GAAATCTGAC TTCTTCCTTA CCCAGCTGTA TCCTCTTATT CTTCCTGTAT
  Y
  ATCATTCCAC TTAGGACTTT AAGCGCCACA CTTAATAACG GTATTTTTCC ATCCCTAGCT
  TTAGAGAAGT GCTCTCAGTC TTTCCCAATA TATAATATAA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61100549	NES16600268	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46171423					SNP	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61100549	NES16600268	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151477849 () rs orientation: forward

Symbol	Name	Function Class
Rr587415	regulatory region 587415	1153 bp distal
Rr587416	regulatory region 587416	826 bp distal
Rr587417	regulatory region 587417	895 bp distal