rs46169704 SNP Detail

Summary

• ID
  rs46169704
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:97883886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTACAGA AACAGCTATT
  ACTATGTCAG TAATAATATA GTAATTTACA TGCGGCAATA GAAGCCCACT AAGTAAGGCT
  ATCTAAGTCA TTGAACAAAT AGGGCATAGA TAGAAGGGAG TTGTGCTGGG CCTTCTGACG
  ATCCAAGTTC GTAAGCTACA ACAATGACAT TCTGGATTAT TGATAGAGTT CAGAGATGAT
  R
  TCAATGAAGT GCGCAGTCAA CTTACATCCA TAACCAGACG AGACCTAATG ATTCAGGACA
  GGGAGGGCCT TGGTATCTGA ACTTGAGAAA CACCTAGTCT CATATGCAGT CTCGACTGTA
  TCCTCCGATA CAGACTTCCC TGTGTGGAGA CAGTCAGCTT CCTCTGATGG CCAGCCCTCA
  AAAATGACAT GTCTCTGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147084247	ENSMUSSNP3846373	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46169704					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:97883886 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm68490	predicted gene, 68490			within coordinates
Nfia	nuclear factor I/A			Intron
				Noncoding-Transcript-Variant
Rr595671	regulatory region 595671			1467 bp proximal
Rr595672	regulatory region 595672			1601 bp proximal