rs46168078 SNP Detail

Summary

• ID
  rs46168078
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41076201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATTGTGAG CTATAGGTTC
  AGCAAGAGAC CTGCCTCAAT ATAGAGATTA GAGAGAGTCA AGGATGACAT CCAATACAAT
  ATCTGACCTT CACATGCACA CATCTGCACA CATAACCACA CATGTGAACA CACATACGCA
  CAGGCATACC CACACATGTT TAAATAAAAG AAGAGATTGG CATTCTAGTC AATAACGTTG
  K
  TTGGGAGCAA CAGAATCTAC TCCTGGCAGT TCAGCCAAAT TAGGTAGAGG TAAGGCTTAT
  TGGAAGATGC TAGAAAGTCC AGGAGTTCCA GAATTGCTGG AAAGCAGGGT TAGTAGTTCA
  CTGTTGTCAG TGAAGCTGAG AGCAATACCT AAGCTCACTG AGAAAGTATT CTAGCAAACT
  AGTATTCTTA GAAGGTATTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60399495	NES15900780	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46168078					SNP	T	T	T	T	T	T	G	T	T	T	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60399495	NES15900780	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41076201 () rs orientation: forward

Symbol	Name	Function Class
Gm64942	predicted gene, 64942	within coordinates
Rr575897	regulatory region 575897	1446 bp proximal
Rr575898	regulatory region 575898	1994 bp proximal