rs46166065 SNP Detail

Summary

• ID
  rs46166065
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121934646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCACTTGAC CTAGTGGAGG
  ATTAGATGAA CGCGTGAGCA CATGGGGGAG GGGAGGGCTC TAGAAAACAG GAAAAATAAC
  TTCATTTTGA TGGTGGTTTA ATACCACCTA GAATCCTGTC AGCCACTTCT GTGTGGCAAT
  CTACACAGTG GATGCTTTTC CCCAAGGTCC TGGACTGACT GACCTACGAC ATCCACTAAC
  R
  CAAGAAACTT AACACTGTGT GACATTGCCA CCTGGTGGCC AGAATCTAGC ACTCTTGAAT
  TCCCTTCGAA TCTCTTGATT ACCTTCCACT CTTAGATTTT TTTATGAGAG CAGGGTATCA
  TATATTATTT GATAGCTGCA TGCTGGGTAC TGGGGGCATG AAAGCCAACA AGTCAGAGAA
  GGCCTCTGCC TTCACAGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135735634	ENSMUSSNP2938120	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46166065					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121934646 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abca4	ATP-binding cassette, sub-family A member 4			Intron
				Noncoding-Transcript-Variant
Gm43158	predicted gene 43158			within coordinates
Rr584243	regulatory region 584243			within coordinates
Rr584244	regulatory region 584244			22 bp proximal
Rr584245	regulatory region 584245			1130 bp proximal