rs46165088 SNP Detail

Summary

• ID
  rs46165088
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138611450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCA GATTTTACTC CTAACTACAG
  Y
  GGCAATACCT CAGCCATCTG TAATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147659867	ENSMUSSNP6655791	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321377816	CHEV_4_138440054	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46165088					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138611450 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15156	CpG island 15156	1659 bp distal
Pla2g2e	phospholipase A2, group IIE	1325 bp downstream
Rr603039	regulatory region 603039	29 bp proximal
Rr603040	regulatory region 603040	343 bp proximal