rs46165017 SNP Detail

Summary

• ID
  rs46165017
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:62448984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTG CCATGTTGTT TTAGATTTCT
  W
  TTATTATTTC CTGATATGCA GGTCT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146703073	ENSMUSSNP5079187	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
ss320320704	CHEV_2_62456697	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46165017					SNP	A	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:62448984 () rs orientation: forward

Symbol	Name	Function Class
Gm39839	predicted gene, 39839	1198 bp upstream
Ifih1	interferon induced with helicase C domain 1	Intron
Rr557887	regulatory region 557887	528 bp distal
Rr557888	regulatory region 557888	within coordinates
Rr557889	regulatory region 557889	1106 bp proximal
Tssr24302	transcription start site region 24302	1376 bp upstream
Tssr24303	transcription start site region 24303	1349 bp upstream
Tssr24304	transcription start site region 24304	1293 bp upstream
Tssr24305	transcription start site region 24305	1279 bp upstream