rs46162759 SNP Detail

Summary

• ID
  rs46162759
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8103959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGAGTCTC TCCATGAAAG
  GCATGTATAC ACATACCCCA CCACTCAAGC TGGAAAGGAG AGAAAGTTAA GTCTCATCAG
  AGATTCAATC AATAATGCTG TATTATTATA GCAAGCCTCT TTTCCTACTA GTGATGAAAA
  TGAATTCATT GTGTTAAGAA AATTTGTCTG TAATACTTTC TAGAATTGGA TTACTGATTC
  W
  CTGTTTTGTG TTCGAATTTA TAAAAATTCT CTGAAAATCT AAGTTCATAA GGATTCATGG
  AAAATCTTGA ATAAGCTGTG CTAATCACAT GATCTATCTG TCTTACCCTG ATCTTATATC
  TATAAAGTCT TAATACTCTG TGCCTTTTAG GGAAAAGAAG CCACAAGAAT CAATCAGAAG
  TGATATTAGG TTAATAAATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132961582	ENSMUSSNP4680878	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46162759					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8103959 () rs orientation: forward

Symbol	Name	Function Class
Col28a1	collagen, type XXVIII, alpha 1	Intron
D6Mit348	DNA segment, Chr 6, Massachusetts Institute of Technology 348	1148 bp proximal
Rr626348	regulatory region 626348	969 bp proximal
Rr626349	regulatory region 626349	1847 bp proximal