rs46161948 SNP Detail

Summary

• ID
  rs46161948
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:162955181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTTTTTCAA ATTCGTGACC TCTTTTTTCA CTAATTTTTA
  TTCCATGCAT ATGCACACAC ACATAGAGAG ATGTTTACAT ATTCCTAAAT ATAATTTGCT
  Y
  AGTCCATATA AAATTACTTG TATGAATGTT TTATGGGCTG ACCATTTGGG ACTGAACAAA
  CAATTGGCGT GTGCTCTTCA CGGGGAAAGA CCACCTCTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145951651	ENSMUSSNP5776983	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46161948					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162955181 () rs orientation: forward

Symbol	Name	Function Class
D1Mit314	DNA segment, Chr 1, Massachusetts Institute of Technology 314	1576 bp distal
Rr407202	regulatory region 407202	within coordinates
Rr422057	regulatory region 422057	775 bp distal
Rr422058	regulatory region 422058	1643 bp proximal