rs46154640 SNP Detail

Summary

• ID
  rs46154640
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148223451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTTGAGA CCCGCTTTGC
  TCACATTCCA GGGTAATCCT CCCTCTGGCC TGCTCCTTAT CCCTTCCCAT GAGAAGGATA
  TGAATATGGA ATTGACAGCT TCTGGTGCGG GGAGTGGGGG GTGGGTGTCA TACCACATTG
  CAGGGATGAC CTTTAATGCA ACATTTCCTA TAGAAACAGG ACAAGACAAC TCTTACATCC
  Y
  TGGAGGGCAG AGTCTAAATC AGTGGTTCTC AACCTTCCTA ATGCTGCAAC CCTTCCACAC
  AGTTCCTCAT GTGGTGACTC CCAATCATAA AATTATTTTC ATTGCTACTT CATAACTGCA
  ATTTCACAAC AGTCAGGAAT TGTAAATATC TGATATGCAG AATATCTGAT ATGCCACCCC
  TGGGAAAGAG TCATTTGACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss147994259	ENSMUSSNP2940130	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs46154640					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148223451 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15292	CpG island 15292			872 bp proximal
Mad2l2	MAD2 mitotic arrest deficient-like 2			Intron
				Noncoding-Transcript-Variant
Rr398855	regulatory region 398855			1290 bp upstream
Rr604600	regulatory region 604600			643 bp proximal
Rr604601	regulatory region 604601			698 bp proximal
Rr604602	regulatory region 604602			998 bp proximal
Rr604603	regulatory region 604603			1211 bp proximal
Rr604604	regulatory region 604604			1259 bp proximal
Tssr40254	transcription start site region 40254			1486 bp upstream
Tssr40255	transcription start site region 40255			1517 bp upstream
Tssr40256	transcription start site region 40256			1688 bp upstream
Tssr40257	transcription start site region 40257			1705 bp upstream
Tssr40258	transcription start site region 40258			1777 bp upstream
Tssr40259	transcription start site region 40259			1789 bp upstream
Tssr40260	transcription start site region 40260			1801 bp upstream
Tssr40261	transcription start site region 40261			1984 bp upstream