rs46154462 SNP Detail

Summary

• ID
  rs46154462
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27246951 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGCAGAGA TCACATGTAT
  TTAGCATCCT GCTGCTGATG AGGTGCTGAC AACCCCTGGC TTCCACCATG CTAAGGCAAG
  CACTTCCCAA GGAAGTCTAC TACTAGCACT CAGGAGTGTT ATGGTTTGTT TTCTGGTTCT
  GATGCTAGGG CCTCGTGCAT ACTAGGTGTG GTGGTTTGTA TATGCTTGGC CCAGGCAGTG
  T
  CACTATTTGG AGGTAAGGCC CTGTTGGAGT AGGTAGATGT AGCCTTGTTG GAGTAGGCAT
  GGCACTGTGT GGGTGTAGAC TTTAAGACCC TCGTCCTAGC TGCCTGGAAG CCAGTATTTT
  CCTAGCAGCC TCCAGTTGGA GATGTAGAAC TCTTGGCTCC TCCTACACCA TGTCTGCCTG
  GATGTGCTTG CCATGCACCC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss134702644	ENSMUSSNP47079	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs46154462					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27246951 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nceh1	neutral cholesterol ester hydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr374718	regulatory region 374718			1596 bp downstream
Rr574361	regulatory region 574361			1570 bp distal
Rr574362	regulatory region 574362			609 bp distal
Rr574363	regulatory region 574363			985 bp proximal
Tssr28610	transcription start site region 28610			656 bp downstream
Tssr28611	transcription start site region 28611			1458 bp upstream
Tssr28612	transcription start site region 28612			1563 bp upstream
Tssr28613	transcription start site region 28613			1892 bp upstream
Tssr32839	transcription start site region 32839			858 bp upstream
Tssr32840	transcription start site region 32840			816 bp upstream
Tssr32841	transcription start site region 32841			1267 bp downstream
Tssr32842	transcription start site region 32842			1322 bp downstream
Tssr32843	transcription start site region 32843			1393 bp downstream