rs46150789 SNP Detail

Summary

• ID
  rs46150789
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122208550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACAAGAGGA GCAGGGGACC TTGTGCATGT GTGACCCATG
  GAAAGAGCAA AGGAAGGCTT TCTGCAGAGC AGGGCATCTG AGCTGAGACC TGCTTATTTA
  W
  TCTGCTTTCA CATCGGCAAC AAGGGGGCAA TGACACCACC CCCTTGGACC CACAGAAATG
  CAGGGAGAAC GATCAGGGAA CAAACTTTTG AAAACCACC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60442570	NES15946481	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	T	A	T	T	A	A		T	A	A	T		A
ss135741168	ENSMUSSNP830772	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						T
ss320911431	CHEV_3_122117819	CHEVERUD	SCREENING_POP	f	SNP												A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46150789					SNP	A	A	A	A	A	T	A	T	T	A	A	A	T	A	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60442570	NES15946481	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122208550 () rs orientation: forward

Symbol	Name	Function Class
Rr584324	regulatory region 584324	392 bp distal