rs46149635 SNP Detail

Summary

• ID
  rs46149635
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14937828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCT TTAAGATCTC TTTCTCCCCT
  Y
  CATGATCCCT TTTCTAGTTT CACGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134617881	ENSMUSSNP4662468	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss320667819	CHEV_3_14872768	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46149635					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14937828 () rs orientation: forward

Symbol	Name	Function Class
Car3	carbonic anhydrase 3	387 bp downstream
Rr397608	regulatory region 397608	1634 bp upstream
Rr573713	regulatory region 573713	999 bp distal
Rr573714	regulatory region 573714	1701 bp proximal
Rr573715	regulatory region 573715	1797 bp proximal
Tssr28448	transcription start site region 28448	1222 bp downstream
Tssr28449	transcription start site region 28449	1158 bp downstream
Tssr28450	transcription start site region 28450	1115 bp downstream
Tssr28451	transcription start site region 28451	1098 bp downstream
Tssr28452	transcription start site region 28452	1076 bp downstream
Tssr28453	transcription start site region 28453	1063 bp downstream
Tssr28454	transcription start site region 28454	1051 bp downstream
Tssr28455	transcription start site region 28455	1033 bp downstream
Tssr28456	transcription start site region 28456	996 bp downstream
Tssr28457	transcription start site region 28457	934 bp downstream
Tssr28458	transcription start site region 28458	737 bp downstream
Tssr28459	transcription start site region 28459	700 bp downstream
Tssr28460	transcription start site region 28460	614 bp downstream
Tssr28461	transcription start site region 28461	558 bp downstream
Tssr28462	transcription start site region 28462	521 bp downstream
Tssr28463	transcription start site region 28463	470 bp downstream
Tssr28464	transcription start site region 28464	429 bp downstream
Tssr28465	transcription start site region 28465	290 bp downstream
Tssr32653	transcription start site region 32653	964 bp upstream
Tssr32654	transcription start site region 32654	231 bp upstream