rs46144772 SNP Detail

Summary

• ID
  rs46144772
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150280268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGTG ATTCATAACA CAAGAGTGGC
  Y
  AAGGGCTGGA AAAACGGTCA GCCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148049962	ENSMUSSNP4854397	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46144772					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150280268 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Car6	carbonic anhydrase 6			Intron
				Noncoding-Transcript-Variant
Rr605219	regulatory region 605219			1592 bp distal
Rr605220	regulatory region 605220			1678 bp distal
Tssr40386	transcription start site region 40386			283 bp upstream
Tssr40387	transcription start site region 40387			1499 bp upstream
Tssr44729	transcription start site region 44729			268 bp downstream
Tssr44730	transcription start site region 44730			298 bp downstream
Tssr44731	transcription start site region 44731			331 bp downstream
Tssr44732	transcription start site region 44732			1544 bp downstream
Tssr44733	transcription start site region 44733			1551 bp downstream