rs46143339 SNP Detail

Summary

• ID
  rs46143339
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180085482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCCCTTC CTGAGAGTCA
  CCTGGAAATA AGGTTGAATC CAACTTCTGA TCCACTCCCA CTTCTCATGC CCAGGAGGTA
  TCTGAGAGGA TCTATGATGC TCTTGGCTTC ACCTATAGCT TGTGATCCAA AAGTGAGTCC
  TGGGCACAAC CTTGGATTCA CTACTGCCTT TTCACTCCTT GTGACCTGTC ACCATCATCA
  Y
  TGCAATCATT GCCACCATTA TTATCAACAG CATCACCATC CTCACTATCA CCATCATCAG
  CACACTTTGC CTGAAAAGAA AGAGCAGATC TCAGTTCAGT AGGAACAGAC TTCAGCTCCC
  CAAGCTCATG GTCTGAATGT GCCCAGGAAG GAGAAACACC CTTCCTCTCC CCCTCCTTAC
  CACAAGAGAG TTAAGAGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148391751	ENSMUSSNP644607	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss320632133	CHEV_2_180178394	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46143339					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180085482 () rs orientation: forward

Symbol	Name	Function Class
Gm75546	predicted gene, 75546	within coordinates
Rr397580	regulatory region 397580	24 bp upstream
Rr572757	regulatory region 572757	1429 bp proximal
Tssr22237	transcription start site region 22237	1412 bp downstream
Tssr22238	transcription start site region 22238	625 bp downstream
Tssr22239	transcription start site region 22239	352 bp upstream
Tssr28110	transcription start site region 28110	126 bp downstream
Tssr28111	transcription start site region 28111	197 bp downstream