rs46138524 SNP Detail

Summary

• ID
  rs46138524
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135797561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACTGCCA GGGGAGCCAC
  GTCTAGAAGT CAGCGCTTCC CTCCTCCTGC CAACTCCACG TTTCCGCCAG CAGGAGGCAC
  CAGCGAAGCG CCAGCGCGGG GTTCGCACGG GAACCTCTAC AAGGACTTGT TCGTTTGCTG
  CAGCAAGGAA GTCAGAGAGC CCAAGCTCTG GAGCGACAGC CCTGGACTGC ACCTCATTCT
  S
  CGCCTCTGTC CTTTAATGCT CGTGAGACTG GGTAGTCTGC TTGACCCCTC TGAGTCTCAC
  ATTCCCCGTG TGGGAAGTGA GGCTGGCCCT GAGAGGGATA TTTGCTCCAA ATTTAGAGGT
  TGAGGCAGAC AGTCTTCTGG CACAAGAGTC TGCTCAGTTC AGATTCACCA CAGCCCAACA
  GTGAGGCCAG GCTCCTCCAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147557388	ENSMUSSNP5321656	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46138524					SNP	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135797561 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15093	CpG island 15093	within coordinates
Cpgi15094	CpG island 15094	1017 bp proximal
Rr367750	regulatory region 367750	1235 bp upstream
Rr602257	regulatory region 602257	within coordinates
Rr602258	regulatory region 602258	117 bp distal
Rr602259	regulatory region 602259	503 bp proximal
Rr602260	regulatory region 602260	1437 bp proximal