rs46136349 SNP Detail

Summary

• ID
  rs46136349
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:97861005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACCATGA GCGAGTAGAA
  CCCTAAACCT CAATTCAAGT GACTTCCCTA TCTGGCCCAT AGCTTGCATA CGTTGTCATC
  TGTTGTTCCA AACCCTTCAG TTTAGTTGTT TCTTCCAGTA GGATCAAAGT AGGCCTAGAC
  TGGGCTGGGG ATGTATAGCC ATATAGGTTA ATAGAAGGAT CCTGAATTCT CCATTTAGAA
  W
  AGGGGAAAAG TCCATGAAAG AAAGAGTATG TTGTATTTTT AAATTTTTAA TATATATGTG
  TATATATAAT CTGCATACTT GATTATACAT TTAAATACAG ATATAAACTT AATTATATAT
  ATGTATACAT GTATAAGCTT GATTATATTT GTACACATAT ATAATTGTAT GTGTATGTAT
  ATAAATGTAT ATATGTATAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss133422167	ENSMUSSNP4453321	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs46136349					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97861005 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	Intron
Rr635234	regulatory region 635234	1628 bp distal
Rr635235	regulatory region 635235	75 bp distal
Tssr57901	transcription start site region 57901	2 bp upstream