rs46134670 SNP Detail

Summary

• ID
  rs46134670
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27244387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCAGCCCC ACAAAAGGGG
  AGAGAAAGCC ACTGCGTTGC CAAGCAACAA GCCTGGCAGC GTTCCCAGGA CAGTCTGAGG
  TGTGTCCTAT TATGAAATGG TAGCAGTAGA TTTTTTTAGT GTTTCCAGAA TCAAGTTAAA
  ATCCTGCCAC CCGGAAGTCA TCATATCATT TATGCATACA TGTAATGTAT ATGTATCATC
  R
  CATATAGTGT GTGTCCACAT ATGTGCACAT GTGATGGTGT ACTTGTGTAA TTCCAGTGGT
  TGGAAATGTT GACTAAGGAG AAAGACAAGT TCAGGGCTAG CCTGGGCAAC TTAGTAAGAC
  ACCCAACCTC ACGCATGCTA AGTGTGTCTT CCATCATTGA GCTGCACATT CCTGGGGGTG
  CATATTCAAT AAAGACATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60380390	NES15883728	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46134670					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60380390	NES15883728	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27244387 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nceh1	neutral cholesterol ester hydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr374718	regulatory region 374718			within coordinates
Rr574359	regulatory region 574359			1462 bp distal
Rr574360	regulatory region 574360			34 bp distal
Rr574361	regulatory region 574361			545 bp proximal
Rr574362	regulatory region 574362			1623 bp proximal
Tssr28607	transcription start site region 28607			1829 bp downstream
Tssr28608	transcription start site region 28608			1797 bp downstream
Tssr28609	transcription start site region 28609			1780 bp downstream
Tssr28610	transcription start site region 28610			1894 bp upstream
Tssr32839	transcription start site region 32839			1692 bp downstream
Tssr32840	transcription start site region 32840			1736 bp downstream