rs46131374 SNP Detail

Summary

• ID
  rs46131374
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150017345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCTAGAGA AGGGCGTCAG
  GAGGGGGCAG AGCTTCACCA GGCTCCCTGG TGTCAACTGG ACTGACTCTT CTTGAAGTCC
  TCATATGCCC TCCACCCAAC AAGGCTCCAG AAACAAGCAT CCCCACGGCC GGTGCTGTCT
  CATGCCCCTG CTAAACTACC TGCTGGCCAC CCACGAAGTA TGCAGATCAC CTTGGCAAGT
  Y
  TGCAGGCGCT GGTCACTTCA AGGACAGCAG TCAACAAGGT GTTCTGTGAC CTCCTACTAT
  GATTCTAGAT TCATCCCTTA TTCCCCCCCT TTTTTAAATC TGTTCTCAAG AAAACACGTG
  ACTACCCTAC AAGAATGTTC GATGTCCCCG ACAATTTGCT GGGTGCTAAG GCACCTGATG
  TCTTTATCCA GTGCTGATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148043419	ENSMUSSNP499224	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46131374					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150017345 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr605111	regulatory region 605111			764 bp proximal
Spsb1	splA/ryanodine receptor domain and SOCS box containing 1			Intron
				Noncoding-Transcript-Variant