rs46130216 SNP Detail

Summary

• ID
  rs46130216
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148656340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTTATTTAT TTATTATATA TAAGTACACT GTAGCTGTCT
  TCAGACACAC CAGAAGAGGT TGTGAGCCAC CATGTGGTTG CTGGGATTTG AACTCAGGAC
  Y
  TCTGGAAGAG CAGTCAGTGC TCTTAACCAC TGAGCCATCT CTCCAGCCCC TCCCCCCCCC
  CCCTTTTCCT TCTTTTTGAG ATAGGGTTTT ACCATACAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss148011769	ENSMUSSNP4570854	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss321421261	CHEV_4_147945992	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs46130216					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148656340 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Exosc10	exosome component 10			Intron
				Noncoding-Transcript-Variant
Rr604704	regulatory region 604704			690 bp distal