rs46127230 SNP Detail

Summary

• ID
  rs46127230
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:41362554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTT TCAGGTAAGG AAGTGTTTGC
  M
  AAAGTCATTT TACCTGGCAG ACATC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60600938	NES16305540	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		A	C	C	A		C
ss144675493	ENSMUSSNP3992785	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
ss322633646	CHEV_8_41994871	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46127230					SNP	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60600938	NES16305540	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:41362554 () rs orientation: forward

Symbol	Name	Function Class
Slc7a2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	Intron
Tssr77030	transcription start site region 77030	1606 bp downstream
Tssr77031	transcription start site region 77031	1352 bp downstream
Tssr77032	transcription start site region 77032	1097 bp downstream
Tssr77033	transcription start site region 77033	838 bp downstream
Tssr77034	transcription start site region 77034	775 bp downstream
Tssr77035	transcription start site region 77035	145 bp upstream
Tssr77036	transcription start site region 77036	1298 bp upstream
Tssr77037	transcription start site region 77037	1493 bp upstream