rs46124196 SNP Detail

Summary

• ID
  rs46124196
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151826565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTTTTTA ACAAGCGTCT
  GTTCTCACCC GCTCTGCTGT CCCTGTGTCC TGTAAGTTCC TCTGTTGCTA AAATTACTCC
  TTGCAGAAAA GCTACACCCT TGCAGTGACT GCACAGGCTG AAGGGTCCTT GTCTGAAATC
  TTGGGGTCAG AAGTGTTTCA GCTATCAGGT TTTCAGATCT GGGGCCAGCT ACATGTGTAT
  R
  ATAGGGTATC CTGGGACACT CAAACTTTAT TGGCATTTCA TATACCTCTA ACTCACAACC
  TGAAGGCCAC CATGAACATT ATTTTTGATG CACCTGTGTT CTTACTGTGG CCCAACCCAT
  TGGGACAGGT ATGGGATTTT CCATTCCTAG TCAGGCCTGG TGCTCAAGAA CTGGCAGTTA
  GGAAACATTT CTGATTTTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136100961	ENSMUSSNP996858	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss321028155	CHEV_3_151783892	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46124196					SNP	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151826565 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Rr587460	regulatory region 587460			672 bp distal
Rr587461	regulatory region 587461			644 bp proximal
Tssr1098	transcription start site region 1098			814 bp upstream
Tssr32394	transcription start site region 32394			608 bp downstream