rs46122061 SNP Detail

Summary

• ID
  rs46122061
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:100691855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTCTTCTC TGCAGCCATC
  TTTATATATA TCTGGTGGTC AGATATAAAA AGACATGAAG TGCGCGTCTC TCCTTCAGAG
  GTGATGAGGA AAACATCCTG GTGCTGCACT TTCGAGGGTC TTTAGGACTA GAGAAAACCA
  CCATCTTCAA GCTACTGGTT TCTCATCCTT TCCTGAACAA CTAGCTGCAG GCTTGACCAT
  Y
  GCTGAGAAAG TCTCATTTAG CTGCAGCCTT CTCACTGAGA GCCGCAGGTG GCTTTAAGAG
  ACGGGTCTGT GGATATTTCT AGATCTTGAC CAACTTTTTT GAGACACATT CACATACCAT
  ACAGTTTGTC CATCCACACT CAATATTTCA GTGGTTTTTA GTGTATGTAA AGACACAGGG
  ACTAACTAGG AAACACTACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147117577	ENSMUSSNP7036910	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs46122061					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:100691855 () rs orientation: forward

Symbol	Name	Function Class
Cachd1	cache domain containing 1	Intron
Rr596037	regulatory region 596037	929 bp distal