rs46117855 SNP Detail

Summary

• ID
  rs46117855
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:8639335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCACCTG CTCCTCTTCC
  CTCCCTTCCC TCCCCTTTCC TTTCCCTAGA AAGCATTGAC TCCATGCCCC TCCCCTCCAA
  GTCTGCTGTC CCAGAAGCCT CTCTTCTACT TTTAACTGAA ACTTTCTCTT TTTCCTGCCA
  CAAGGATTCG CCATAGCTTC CCCTGTACTG CCTGGCTCCC CAGATCACAA ACCAATTCTC
  T
  CAAAGCCTGT GGCTTCACCG CCCGCCACTG GCATTTCAGG GCCACGGACC ACACAAATGG
  TGGCAGGTGA GTTCTGGATG AAGTACGACC AGCTCTGACA TTCAGCAAGC ATCAAGCCTG
  CAATCCATGA AATGGGTTCA GACATGACCC CTTTCTCAAA CAGGAAGGGC AAGGTAGAAA
  GTGGGGCCCT GTGGCTCTGT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146766651	ENSMUSSNP5022609	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss323245283	CHEV_10_8483369	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46117855					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8639335 () rs orientation: forward

Symbol	Name	Function Class
Rr384117	regulatory region 384117	552 bp downstream
Rr427376	regulatory region 427376	240 bp distal
Rr427377	regulatory region 427377	46 bp distal
Sash1	SAM and SH3 domain containing 1	Intron
Tssr3133	transcription start site region 3133	1175 bp upstream
Tssr96640	transcription start site region 96640	1312 bp upstream
Tssr96641	transcription start site region 96641	1288 bp upstream
Tssr96642	transcription start site region 96642	1257 bp upstream
Tssr96643	transcription start site region 96643	1201 bp upstream
Tssr96644	transcription start site region 96644	1105 bp upstream
Tssr96645	transcription start site region 96645	955 bp upstream