rs46112462 SNP Detail

Summary

• ID
  rs46112462
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40578543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTTAACA ACCTTTCTGT
  GCCCACTCCC CAAAGAAGGC AGCACACAAA ACACACACTG CAGCCCATGG CCTGGACCAG
  GAGAAGGAAT GTGTTAGGAG GAGGATGGTT TGTGCTGTGC TTTACGGCGC TTTCATTATG
  ATCCCAGGGA AAGATCTTTA AAAGAATATT GTAATAAAAA TGCCTAAATA TAAGAATAAA
  R
  TCAGTGACAC CAGTGAGAGA CCTGCTAAGG ATGGAGTTAG AAATCCAGTT TTTACTTTCA
  GCTGGTATTT AATGATTGCA CAGACCACGG GACACAGTGT GAGATGATGC ATGCGTGTCC
  TCATCTGTTT CTTGTCGCTG AGACAGAGTA CTGACGGGAT GAACTAGGGA AGGAAGGGTC
  TCGGGAGCCT CAGCAAGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60393130	NES15896641	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46112462					SNP	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60393130	NES15896641	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40578543 () rs orientation: forward

Symbol	Name	Function Class
1700017G19Rik	RIKEN cDNA 1700017G19 gene	1482 bp upstream
Rr575827	regulatory region 575827	583 bp distal
Rr575828	regulatory region 575828	653 bp distal
Rr575829	regulatory region 575829	889 bp proximal
Rr575830	regulatory region 575830	1145 bp proximal
Tssr33066	transcription start site region 33066	1476 bp upstream