rs46112222 SNP Detail

Summary

• ID
  rs46112222
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:139907258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCGAAGGACC AAACAATCCA ACTGCATATC CATAAAAAGG
  AACGGGGGAG GTACATCCAT CAGTGGTAGG ATGCTCACCC AGCATGTGTG CGGGTCCATC
  Y
  CCAGAATCAA TGGGGGGGGG GGTAACATAA ACACAAAGGA ATGAGGCATT ATTACATAGC
  TATGGACAAA TCTTGAAAAC ATTATGCTCA CTGAAAGAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147670534	ENSMUSSNP6263844	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46112222					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:139907258 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr397340	regulatory region 397340			1328 bp upstream
Rr566073	regulatory region 566073			396 bp proximal
Rr566074	regulatory region 566074			497 bp proximal
Rr566075	regulatory region 566075			1106 bp proximal
Rr566076	regulatory region 566076			1412 bp proximal
Tasp1	taspase, threonine aspartase 1			Intron
				Noncoding-Transcript-Variant
Tssr26542	transcription start site region 26542			487 bp downstream
Tssr26543	transcription start site region 26543			1323 bp downstream