rs46108527 SNP Detail

Summary

• ID
  rs46108527
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116945115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTCTTAGAA ATACTTGACA
  TTTCTTTCTC TATCTCTAAA CTCAGTCTGT CACCTGTCAC TGGTTTTTCT ACTCATTTTC
  CAGTCATCTT CATCATTTGT CCCCATGGCC AACATTCTAG TCCACGCCAC CACTATCTTT
  TGTGGAAGCA GTTGCAATCA TCTACTTTAT TGTTTACTTT ATAGGCAGGG AAGATCAAAT
  R
  TTCACACTTA AAAGTGTAGA ATGGACATTG GTACTGAATT AGCAAACCAT AAATGCATGA
  AAATTAATAA AAGCATTATA CTTTGTCTCA TTTATTCTGT TTTCTTAATA TTTAGATAGC
  TAATATTTTT AAAAGCAAGC AGGCATGTTA GTCCCTTACT AATACCCCTT TAATGGCTTC
  CCATTGCTTT TAACACTTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss60434911	NES15943029	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs46108527					SNP	A	A	A	A	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60434911	NES15943029	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116945115 () rs orientation: forward

Symbol	Name	Function Class
Rr583834	regulatory region 583834	1548 bp proximal
Rr583835	regulatory region 583835	1646 bp proximal