rs46108480 SNP Detail

Summary

• ID
  rs46108480
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115980982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAC GAACTTCTGC ACGTGGTTAG
  R
  GGATTATCCC ATTGTCTGGA GACAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss133574415	ENSMUSSNP2864699	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss321917087	CHEV_6_115954039	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46108480					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115980982 () rs orientation: forward

Symbol	Name	Function Class
Gm53336	predicted gene, 53336	within coordinates
Rr637126	regulatory region 637126	1947 bp distal
Rr637127	regulatory region 637127	1198 bp distal
Rr637128	regulatory region 637128	within coordinates
Rr637129	regulatory region 637129	18 bp proximal
Rr637130	regulatory region 637130	937 bp proximal
Rr637131	regulatory region 637131	1601 bp proximal