rs46107604 SNP Detail

Summary

• ID
  rs46107604
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41572226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAACTTTTAG TTTTTGAGAA TTTGCAGTGG GGAACCGTCT
  TAGACAATCA GCAGTTAAAT GCACCTTCAT GTTGGGAGCA GGAAGCCTGA TAAAACAGTG
  K
  ACCCATCCAG GTAGATTATG ATTAGAGGCA GTGGTGCCAT ATCATTATGA CTCAAATTTA
  AAATTTGTAA GCGTCTTTTC TAACATGAAT TATCCAATAG                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60397316	NES15898370	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46107604					SNP	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60397316	NES15898370	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41572226 () rs orientation: forward

Symbol	Name	Function Class
Jade1	jade family PHD finger 1	927 bp downstream
Rr575994	regulatory region 575994	507 bp distal
Rr575995	regulatory region 575995	688 bp proximal