rs46107407 SNP Detail

Summary

• ID
  rs46107407
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:149736947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCTCTCACC TTTGGGTCCT TGAGCCTCAT
  CATCACTGTC GGAGCTGTCA TTACTCACGA TGTGCTTTGC TGTAATATTT TCTATGGGAA
  GAAGACAAAA Tcattgagac atcttgggga tcagattcac aactaaattt acggggcaga
  Y
  gagggagtat tggtgcaagt ctttaattcc agctcgcagg aggtgggggc aggcagaact
  ctccgggttc aaggccagtt ccaagccaac cagagctatg tggtggtcgc attcctttTT
  AACTGTGGAG AAGTGATCAG AGCAAAACTA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss145700905	ENSMUSSNP2257051	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C		T
ss320043134	CHEV_1_151708326	CHEVERUD	SCREENING_POP	f	SNP				C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs46107407					SNP	C	C	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149736947 () rs orientation: forward

Symbol	Name	Function Class
Pla2g4a	phospholipase A2, group IVA (cytosolic, calcium-dependent)	Intron
Rr420110	regulatory region 420110	1614 bp proximal