rs46100946 SNP Detail

Summary

• ID
  rs46100946
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:56489440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTATGGC CCTCACTGGC
  CGACTGGCCT CCAAGTTCAG TGAGAGGCCT AGTATAAAGC CAGAAGGAGA ATGACAGAGC
  GAGACACCTG AACTTACTGA CATTGCACAA TCGCTGGCAG CCTCGGAGCC GAAGTCACCG
  TGTGCACATG TGAAGACTAG TACTTAGCTC GTACTTAGCT GGTTGATGTC ACCGTGTGCA
  Y
  GGGTGGAAAC TCGTTCTTAG CCATTTGTTT TGTCTCTTCA GTTACATGGT TATGCTCTTT
  GAGGAAGCCT GTTCTGTGTA ACTGATACTT GTAGTGCAGT TTAAAGTCTA CATTGAAACA
  TTGTCTCAAG GTACGCAAGG CAGGTGTCGG TAAAGCAAAG GTTTGTCATT GGATACATGG
  ACAAAAATCC TACGTTTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61809896	NES17750314	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs46100946					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61809896	NES17750314	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:56489440 () rs orientation: forward

Symbol	Name	Function Class
4933404M09Rik	RIKEN cDNA 4933404M09 gene	1651 bp upstream
Gm24716	predicted gene, 24716	798 bp downstream
Rr480710	regulatory region 480710	616 bp distal
Rr480711	regulatory region 480711	900 bp proximal